iSEEindex

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see iSEEindex.

iSEE extension for a landing page to a custom collection of data sets

Bioconductor version: 3.19

This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.

Author: Kevin Rue-Albrecht [aut, cre] , Thomas Sandmann [ctb] , Federico Marini [aut] , Denali Therapeutics [fnd]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEindex")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("iSEEindex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEindex")

Adding custom header and footer to the landing page HTML R Script

Implementing custom iSEEindex resources HTML R Script

Introduction to iSEEindex HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.2.0

In Bioconductor since BioC 3.18 (R-4.3) (1 year)

License Artistic-2.0

Depends SummarizedExperiment, SingleCellExperiment

Imports BiocFileCache, DT, iSEE, methods, paws.storage, rintrojs, shiny, shinydashboard, shinyjs, stringr, urltools, utils

System Requirements

URL https://github.com/iSEE/iSEEindex

Bug Reports https://support.bioconductor.org/t/iSEEindex

Suggests BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), yaml

Linking To

Enhances

Depends On Me

Imports Me

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Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEindex_1.2.0.tar.gz

Windows Binary (x86_64) iSEEindex_1.2.0.zip

macOS Binary (x86_64) iSEEindex_1.2.0.tgz

macOS Binary (arm64) iSEEindex_1.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/iSEEindex

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEindex

Bioc Package Browser https://code.bioconductor.org/browse/iSEEindex/

Package Short Url https://bioconductor.org/packages/iSEEindex/

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