gwascat

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see gwascat.

representing and modeling data in the EMBL-EBI GWAS catalog

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("gwascat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gwascat")

Details

See More

Suggests DO.db, DT, knitr, RBGL, testthat, rmarkdown, dplyr, Gviz, Rsamtools, rtracklayer, graph, ggbio, DelayedArray, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle

Linking To

Enhances SNPlocs.Hsapiens.dbSNP144.GRCh37

Depends On Me vtpnet, liftOver

Imports Me circRNAprofiler

Suggests Me GenomicScores, TFutils, hmdbQuery, ldblock, parglms, grasp2db

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.