funtooNorm

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see funtooNorm.

Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit

Bioconductor version: 3.19

Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.

Author: Celia Greenwood <celia.greenwood at mcgill.ca>,Stepan Grinek <stepan.grinek at ladydavis.ca>, Maxime Turgeon <maxime.turgeon at mail.mcgill.ca>, Kathleen Klein <kathleen.klein at mail.mcgill.ca>

Maintainer: Kathleen Klein <kathleen.klein at mail.mcgill.ca>

Citation (from within R, enter citation("funtooNorm")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("funtooNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DNAMethylation, Normalization, Preprocessing, Software

Version 1.28.0

In Bioconductor since BioC 3.5 (R-3.4) (7.5 years)

License GPL-3

Depends R (>= 3.4)

Imports pls, matrixStats, minfi, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomeInfoDb, grDevices, graphics, stats

System Requirements

URL

Suggests prettydoc, minfiData, knitr, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package funtooNorm_1.28.0.tar.gz

Windows Binary (x86_64) funtooNorm_1.28.0.zip

macOS Binary (x86_64) funtooNorm_1.28.0.tgz

macOS Binary (arm64) funtooNorm_1.28.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/funtooNorm

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/funtooNorm

Bioc Package Browser https://code.bioconductor.org/browse/funtooNorm/

Package Short Url https://bioconductor.org/packages/funtooNorm/

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