flowClust

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see flowClust.

Clustering for Flow Cytometry

Bioconductor version: 3.19

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <greg at ozette.ai>

Maintainer: Greg Finak <greg at ozette.ai>, Mike Jiang <mike at ozette.ai>

Citation (from within R, enter citation("flowClust")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")

Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package HTML R Script

Reference Manual PDF

README Text

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, FlowCytometry, ImmunoOncology, Software, Visualization

Version 3.42.0

In Bioconductor since BioC 2.2 (R-2.7) (16.5 years)

License MIT

Depends R (>= 2.5.0)

Imports BiocGenerics, methods, Biobase, graph, flowCore, parallel

System Requirements GNU make

URL

Suggests testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto, flowStats(>= 4.7.1)

Linking To

Enhances

Depends On Me

Imports Me cyanoFilter, flowTrans

Suggests Me BiocGenerics, flowTime, segmenTier

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowClust_3.42.0.tar.gz

Windows Binary (x86_64) flowClust_3.42.0.zip

macOS Binary (x86_64) flowClust_3.42.0.tgz

macOS Binary (arm64) flowClust_3.42.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowClust

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowClust

Bioc Package Browser https://code.bioconductor.org/browse/flowClust/

Package Short Url https://bioconductor.org/packages/flowClust/

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