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breakpointR
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see breakpointR.
Find breakpoints in Strand-seq data
Bioconductor version: 3.19
This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
Author: David Porubsky, Ashley Sanders, Aaron Taudt
Maintainer: David Porubsky <david.porubsky at gmail.com>
Citation (from within R, enter
citation("breakpointR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("breakpointR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("breakpointR") Reference Manual
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NEWS
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LICENSE
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Details
Version
1.22.0
In Bioconductor since
BioC 3.8 (R-3.5) (6 years)
License
file LICENSE
Imports
methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb(>= 1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2, BiocGenerics, gtools, doParallel, foreach
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Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
breakpointR_1.22.0.tar.gz
Windows Binary (x86_64)
breakpointR_1.22.0.zip
macOS Binary (x86_64)
breakpointR_1.22.0.tgz
macOS Binary (arm64)
breakpointR_1.22.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/breakpointR
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/breakpointR
Bioc Package Browser
https://code.bioconductor.org/browse/breakpointR/
Package Short Url
https://bioconductor.org/packages/breakpointR/
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