SpacePAC

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see SpacePAC.

Identification of Mutational Clusters in 3D Protein Space via Simulation.

Bioconductor version: 3.19

Identifies clustering of somatic mutations in proteins via a simulation approach while considering the protein's tertiary structure.

Author: Gregory Ryslik, Hongyu Zhao

Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>

Citation (from within R, enter citation("SpacePAC")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("SpacePAC")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SpacePAC")

SpacePAC: Identifying mutational clusters in 3D protein space using simulation PDF R Script

Reference Manual PDF

NEWS Text

Version 1.42.0

In Bioconductor since BioC 2.13 (R-3.0) (11 years)

License GPL-2

Depends R (>= 2.15), iPAC

Imports

System Requirements

URL

Linking To

Enhances

Depends On Me QuartPAC

Imports Me

Suggests Me

Links To Me

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Follow Installation instructions to use this package in your R session.

Source Package SpacePAC_1.42.0.tar.gz

Windows Binary (x86_64) SpacePAC_1.42.0.zip (64-bit only)

macOS Binary (x86_64) SpacePAC_1.42.0.tgz

macOS Binary (arm64) SpacePAC_1.42.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/SpacePAC

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SpacePAC

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