SMAD

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see SMAD.

Statistical Modelling of AP-MS Data (SMAD)

Bioconductor version: 3.19

Assigning probability scores to protein interactions captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.

Author: Qingzhou Zhang [aut, cre]

Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>

Citation (from within R, enter citation("SMAD")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("SMAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SMAD")

SMAD Quick Start HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews MassSpectrometry, Proteomics, Software

Version 1.20.0

In Bioconductor since BioC 3.9 (R-3.6) (5.5 years)

License MIT + file LICENSE

Depends R (>= 3.6.0), RcppAlgos

Imports magrittr (>= 1.5), dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0)

System Requirements

URL

Suggests knitr, rmarkdown, testthat, BiocStyle

Linking To Rcpp

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SMAD_1.20.0.tar.gz

Windows Binary (x86_64) SMAD_1.20.0.zip (64-bit only)

macOS Binary (x86_64) SMAD_1.20.0.tgz

macOS Binary (arm64) SMAD_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/SMAD

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SMAD

Bioc Package Browser https://code.bioconductor.org/browse/SMAD/

Package Short Url https://bioconductor.org/packages/SMAD/

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