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RNAmodR.RiboMethSeq

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see RNAmodR.RiboMethSeq.

Detection of 2'-O methylations by RiboMethSeq


Bioconductor version: 3.19

RNAmodR.RiboMethSeq implements the detection of 2'-O methylations on RNA from experimental data generated with the RiboMethSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb, fnd]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.RiboMethSeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RNAmodR.RiboMethSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.RiboMethSeq")
RNAmodR.RiboMethSeq HTML R Script
Reference Manual PDF
NEWS Text

Details

Version 1.18.0
In Bioconductor since BioC 3.10 (R-3.6) (5 years)
License Artistic-2.0
Depends R (>= 4.0), RNAmodR(>= 1.5.3)
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) RNAmodR.RiboMethSeq_1.18.0.zip (64-bit only)
macOS Binary (x86_64) RNAmodR.RiboMethSeq_1.18.0.tgz
macOS Binary (arm64) RNAmodR.RiboMethSeq_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAmodR.RiboMethSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAmodR.RiboMethSeq
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