R4RNA

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see R4RNA.

An R package for RNA visualization and analysis

Bioconductor version: 3.19

A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.

Author: Daniel Lai, Irmtraud Meyer <irmtraud.meyer at cantab.net>

Maintainer: Daniel Lai <jujubix at cs.ubc.ca>

Citation (from within R, enter citation("R4RNA")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("R4RNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("R4RNA")

R4RNA.pdf PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Alignment, DataImport, DataRepresentation, MultipleComparison, MultipleSequenceAlignment, Preprocessing, Software, Visualization

Version 1.32.0

In Bioconductor since BioC 3.3 (R-3.3) (8.5 years)

License GPL-3

Depends R (>= 3.2.0), Biostrings(>= 2.38.0)

Imports

System Requirements

URL http://www.e-rna.org/r-chie/

Suggests

Linking To

Enhances

Depends On Me

Imports Me ggmsa, rnaCrosslinkOO

Suggests Me rfaRm

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package R4RNA_1.32.0.tar.gz

Windows Binary (x86_64) R4RNA_1.32.0.zip

macOS Binary (x86_64) R4RNA_1.32.0.tgz

macOS Binary (arm64) R4RNA_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/R4RNA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/R4RNA

Bioc Package Browser https://code.bioconductor.org/browse/R4RNA/

Package Short Url https://bioconductor.org/packages/R4RNA/

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