PICS

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq

Bioconductor version: 3.19

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PICS")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

The PICS users guide HTML R Script

Reference Manual PDF

Version 2.48.0

In Bioconductor since BioC 2.6 (R-2.11) (14.5 years)

License Artistic-2.0

Depends R (>= 3.0.0)

Imports utils, stats, graphics, grDevices, methods, IRanges, GenomicRanges, Rsamtools, GenomicAlignments

System Requirements

Suggests rtracklayer, parallel, knitr

Linking To

Enhances

Depends On Me

Imports Me PING

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package PICS_2.48.0.tar.gz

Windows Binary (x86_64) PICS_2.48.0.zip

macOS Binary (x86_64) PICS_2.48.0.tgz

macOS Binary (arm64) PICS_2.48.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/PICS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS

Package Downloads Report Download Stats