Omixer

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see Omixer.

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

Bioconductor version: 3.19

Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.

Author: Lucy Sinke [cre, aut]

Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>

Citation (from within R, enter citation("Omixer")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Omixer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Omixer")

my-vignette HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization

Version 1.14.0

In Bioconductor since BioC 3.12 (R-4.0) (4 years)

License MIT + file LICENSE

Depends R (>= 4.0.0)

Imports dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr

System Requirements

URL

Bug Reports https://github.com/molepi/Omixer/issues

Suggests knitr, rmarkdown, BiocStyle, magick, testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Omixer_1.14.0.tar.gz

Windows Binary (x86_64) Omixer_1.14.0.zip

macOS Binary (x86_64) Omixer_1.14.0.tgz

macOS Binary (arm64) Omixer_1.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Omixer

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Omixer

Bioc Package Browser https://code.bioconductor.org/browse/Omixer/

Package Short Url https://bioconductor.org/packages/Omixer/

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