MsBackendMgf

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see MsBackendMgf.

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Bioconductor version: 3.19

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] , Johannes Rainer [aut] , Sebastian Gibb [aut] , Michael Witting [ctb] , Adriano Rutz [ctb]

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Citation (from within R, enter citation("MsBackendMgf")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MsBackendMgf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMgf")

Description and usage of MsBackendMgf HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software

Version 1.12.0

In Bioconductor since BioC 3.13 (R-4.1) (3.5 years)

License Artistic-2.0

Depends R (>= 4.0), Spectra(>= 1.5.14)

Imports ProtGenerics(>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats

System Requirements

URL https://github.com/RforMassSpectrometry/MsBackendMgf

Bug Reports https://github.com/RforMassSpectrometry/MsBackendMgf/issues

Suggests testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me CompoundDb, MsBackendRawFileReader, xcms

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsBackendMgf_1.12.0.tar.gz

Windows Binary (x86_64) MsBackendMgf_1.12.0.zip

macOS Binary (x86_64) MsBackendMgf_1.12.0.tgz

macOS Binary (arm64) MsBackendMgf_1.12.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MsBackendMgf

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsBackendMgf

Bioc Package Browser https://code.bioconductor.org/browse/MsBackendMgf/

Package Short Url https://bioconductor.org/packages/MsBackendMgf/

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