MOMA

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see MOMA.

Multi Omic Master Regulator Analysis

Bioconductor version: 3.19

This package implements the inference of candidate master regulator proteins from multi-omics' data (MOMA) algorithm, as well as ancillary analysis and visualization functions.

Author: Evan Paull [aut], Sunny Jones [aut, cre], Mariano Alvarez [aut]

Maintainer: Sunny Jones <sunnyjjones at gmail.com>

Citation (from within R, enter citation("MOMA")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MOMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MOMA")

MOMA - Multi Omic Master Regulator Analysis HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, FeatureExtraction, FunctionalGenomics, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology, Transcriptomics

Version 1.16.0

In Bioconductor since BioC 3.11 (R-4.0) (4.5 years)

License GPL-3

Depends R (>= 4.0)

Imports circlize, cluster, ComplexHeatmap, dplyr, ggplot2, graphics, grid, grDevices, magrittr, methods, MKmisc, MultiAssayExperiment, parallel, qvalue, RColorBrewer, readr, reshape2, rlang, stats, stringr, tibble, tidyr, utils

System Requirements

URL

Bug Reports https://github.com/califano-lab/MOMA/issues

Suggests BiocStyle, knitr, rmarkdown, testthat, viper

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MOMA_1.16.0.tar.gz

Windows Binary (x86_64) MOMA_1.16.0.zip (64-bit only)

macOS Binary (x86_64) MOMA_1.16.0.tgz

macOS Binary (arm64) MOMA_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MOMA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MOMA

Bioc Package Browser https://code.bioconductor.org/browse/MOMA/

Package Short Url https://bioconductor.org/packages/MOMA/

Package Downloads Report Download Stats