GA4GHshiny

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see GA4GHshiny.

Shiny application for interacting with GA4GH-based data servers

Bioconductor version: 3.19

GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb], Elizabeth Borgognoni [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHshiny")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GA4GHshiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GA4GHshiny")

GA4GHshiny HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GUI, Software

Version 1.26.0

In Bioconductor since BioC 3.6 (R-3.4) (7 years)

License GPL-3

Depends GA4GHclient

Imports AnnotationDbi, BiocGenerics, dplyr, DT, GenomeInfoDb, openxlsx, GenomicFeatures, methods, purrr, S4Vectors, shiny, shinyjs, tidyr, shinythemes

System Requirements

URL https://github.com/labbcb/GA4GHshiny

Bug Reports https://github.com/labbcb/GA4GHshiny/issues

Suggests BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GA4GHshiny_1.26.0.tar.gz

Windows Binary (x86_64) GA4GHshiny_1.26.0.zip

macOS Binary (x86_64) GA4GHshiny_1.26.0.tgz

macOS Binary (arm64) GA4GHshiny_1.26.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GA4GHshiny

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GA4GHshiny

Bioc Package Browser https://code.bioconductor.org/browse/GA4GHshiny/

Package Short Url https://bioconductor.org/packages/GA4GHshiny/

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