ERSSA

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ERSSA.

Empirical RNA-seq Sample Size Analysis

Bioconductor version: 3.19

The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.

Author: Zixuan Shao [aut, cre]

Maintainer: Zixuan Shao <Zixuanshao.zach at gmail.com>

Citation (from within R, enter citation("ERSSA")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ERSSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ERSSA")

ERSSA Package Introduction HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, MultipleComparison, QualityControl, RNASeq, Software, Transcription

Version 1.22.0

In Bioconductor since BioC 3.8 (R-3.5) (6 years)

License GPL-3 | file LICENSE

Depends R (>= 4.0.0)

Imports edgeR(>= 3.23.3), DESeq2(>= 1.21.16), ggplot2 (>= 3.0.0), RColorBrewer (>= 1.1-2), plyr (>= 1.8.4), BiocParallel(>= 1.15.8), apeglm(>= 1.4.2), grDevices, stats, utils

System Requirements

URL https://github.com/zshao1/ERSSA

Suggests BiocStyle, knitr, rmarkdown

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