CytoPipelineGUI

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see CytoPipelineGUI.

GUI's for visualization of flow cytometry data analysis pipelines

Bioconductor version: 3.19

This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.

Author: Philippe Hauchamps [aut, cre] , Laurent Gatto [aut] , Dan Lin [ctb]

Maintainer: Philippe Hauchamps <philippe.hauchamps at uclouvain.be>

Citation (from within R, enter citation("CytoPipelineGUI")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CytoPipelineGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CytoPipelineGUI")

CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline HTML R Script

Demonstration of the CytoPipeline R package suite functionalities HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FlowCytometry, GUI, ImmunoOncology, Preprocessing, QualityControl, ShinyApps, Software, Visualization, WorkflowStep

Version 1.2.0

In Bioconductor since BioC 3.18 (R-4.3) (1 year)

License GPL-3

Depends R (>= 4.3), CytoPipeline

Imports shiny, plotly, ggplot2, flowCore

System Requirements

URL https://uclouvain-cbio.github.io/CytoPipelineGUI

Bug Reports https://github.com/UCLouvain-CBIO/CytoPipelineGUI/issues

Suggests testthat (>= 3.0.0), vdiffr, diffviewer, knitr, rmarkdown, BiocStyle, patchwork

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CytoPipelineGUI_1.2.0.tar.gz

Windows Binary (x86_64) CytoPipelineGUI_1.2.0.zip

macOS Binary (x86_64) CytoPipelineGUI_1.2.0.tgz

macOS Binary (arm64) CytoPipelineGUI_1.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CytoPipelineGUI

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CytoPipelineGUI

Bioc Package Browser https://code.bioconductor.org/browse/CytoPipelineGUI/

Package Short Url https://bioconductor.org/packages/CytoPipelineGUI/

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