BiocPkgTools

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see BiocPkgTools.

Collection of simple tools for learning about Bioconductor Packages

Bioconductor version: 3.19

Bioconductor has a rich ecosystem of metadata around packages, usage, and build status. This package is a simple collection of functions to access that metadata from R. The goal is to expose metadata for data mining and value-added functionality such as package searching, text mining, and analytics on packages.

Author: Shian Su [aut, ctb], Lori Shepherd [ctb], Marcel Ramos [aut, ctb] , Felix G.M. Ernst [ctb], Jennifer Wokaty [ctb], Charlotte Soneson [ctb], Martin Morgan [ctb], Vince Carey [ctb], Sean Davis [aut, cre]

Maintainer: Sean Davis <seandavi at gmail.com>

Citation (from within R, enter citation("BiocPkgTools")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BiocPkgTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocPkgTools")

Overview of BiocPkgTools HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.22.0

In Bioconductor since BioC 3.8 (R-3.5) (6 years)

License MIT + file LICENSE

Depends htmlwidgets

Imports BiocFileCache, BiocManager, biocViews, tibble, magrittr, methods, rlang, stringr, stats, rvest, dplyr, xml2, readr, httr, htmltools, DT, tools, utils, igraph, jsonlite, gh, RBGL, graph, rorcid

System Requirements mailsend-go

URL https://github.com/seandavi/BiocPkgTools

Bug Reports https://github.com/seandavi/BiocPkgTools/issues/new

Suggests BiocStyle, knitr, rmarkdown, testthat, tm, lubridate, networkD3, visNetwork, clipr, blastula, kableExtra, DiagrammeR, SummarizedExperiment

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me rworkflows

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocPkgTools_1.22.0.tar.gz

Windows Binary (x86_64) BiocPkgTools_1.22.0.zip (64-bit only)

macOS Binary (x86_64) BiocPkgTools_1.22.0.tgz

macOS Binary (arm64) BiocPkgTools_1.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BiocPkgTools

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocPkgTools

Bioc Package Browser https://code.bioconductor.org/browse/BiocPkgTools/

Package Short Url https://bioconductor.org/packages/BiocPkgTools/

Package Downloads Report Download Stats