BiocHail

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see BiocHail.

basilisk and hail

Bioconductor version: 3.19

Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.

Author: Vincent Carey [aut, cre]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocHail")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BiocHail")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHail")

01 BiocHail -- GWAS tutorial HTML R Script

02 Working with larger VCF: T2T by chromosome HTML R Script

03 Working with UK Biobank summary statistics HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.4.0

In Bioconductor since BioC 3.17 (R-4.3) (1.5 years)

License Artistic-2.0

Depends R (>= 4.3.0), graphics, stats, utils

Imports reticulate, basilisk, BiocFileCache, methods, dplyr, BiocGenerics

System Requirements

URL https://github.com/vjcitn/BiocHail

Bug Reports https://github.com/vjcitn/BiocHail/issues

Suggests knitr, testthat, BiocStyle, ggplot2, DT

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocHail_1.4.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/BiocHail

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocHail

Bioc Package Browser https://code.bioconductor.org/browse/BiocHail/

Package Short Url https://bioconductor.org/packages/BiocHail/

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