BREW3R.r

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see BREW3R.r.

R package associated to BREW3R

Bioconductor version: 3.19

This R package provide functions that are used in the BREW3R workflow. This mainly contains a function that extend a gtf as GRanges using information from another gtf (also as GRanges). The process allows to extend gene annotation without increasing the overlap between gene ids.

Author: Lucille Lopez-Delisle [aut, cre]

Maintainer: Lucille Lopez-Delisle <lucille.delisle at epfl.ch>

Citation (from within R, enter citation("BREW3R.r")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BREW3R.r")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BREW3R.r")

BREW3R.r HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GenomeAnnotation, Software

Version 1.0.1

In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)

License GPL-3

Depends

Imports GenomicRanges, methods, rlang, S4Vectors, utils

System Requirements

URL https://github.com/lldelisle/BREW3R.r

Bug Reports https://github.com/lldelisle/BREW3R.r/issues/

Suggests testthat (>= 3.0.0), IRanges, knitr, rmarkdown, BiocStyle, rtracklayer

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BREW3R.r_1.0.1.tar.gz

Windows Binary (x86_64) BREW3R.r_1.0.1.zip

macOS Binary (x86_64) BREW3R.r_1.0.1.tgz

macOS Binary (arm64) BREW3R.r_1.0.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/BREW3R.r

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BREW3R.r

Bioc Package Browser https://code.bioconductor.org/browse/BREW3R.r/

Package Short Url https://bioconductor.org/packages/BREW3R.r/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.19 Source Archive