orthosData

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see orthosData.

Data for the orthos package

Bioconductor version: 3.18

`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.

Author: Panagiotis Papasaikas [aut, cre] , Charlotte Soneson [aut] , Michael Stadler [aut] , Friedrich Miescher Institute for Biomedical Research [cph]

Maintainer: Panagiotis Papasaikas <panagiotis.papasaikas at fmi.ch>

Citation (from within R, enter citation("orthosData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("orthosData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("orthosData")

1. Introduction to orthos HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, RNASeqData

Version 1.0.0

License MIT + file LICENSE

Depends

Imports AnnotationHub, BiocFileCache, ExperimentHub, HDF5Array, stringr, SummarizedExperiment

System Requirements

URL https://github.com/fmicompbio/orthosData

Bug Reports https://github.com/fmicompbio/orthosData/issues

Suggests BiocStyle, ggplot2, knitr, rmarkdown, testthat

Linking To

Enhances

Depends On Me

Imports Me orthos

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package orthosData_1.0.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/orthosData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/orthosData

Package Short Url https://bioconductor.org/packages/orthosData/

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