sigFeature

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see sigFeature.

sigFeature: Significant feature selection using SVM-RFE & t-statistic

Bioconductor version: 3.18

This package provides a novel feature selection algorithm for binary classification using support vector machine recursive feature elimination SVM-RFE and t-statistic. In this feature selection process, the selected features are differentially significant between the two classes and also they are good classifier with higher degree of classification accuracy.

Author: Pijush Das Developer [aut, cre], Dr. Susanta Roychudhury User [ctb], Dr. Sucheta Tripathy User [ctb]

Maintainer: Pijush Das Developer <topijush at gmail.com>

Citation (from within R, enter citation("sigFeature")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("sigFeature")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigFeature")

sigFeature HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, FeatureExtraction, GeneExpression, GenePrediction, Microarray, Normalization, Software, SupportVectorMachine, Transcription, mRNAMicroarray

Version 1.20.0

In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)

License GPL (>= 2)

Depends R (>= 3.5.0)

Imports biocViews, nlme, e1071, openxlsx, pheatmap, RColorBrewer, Matrix, SparseM, graphics, stats, utils, SummarizedExperiment, BiocParallel, methods

System Requirements

URL

Suggests RUnit, BiocGenerics, knitr, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sigFeature_1.20.0.tar.gz

Windows Binary sigFeature_1.20.0.zip

macOS Binary (x86_64) sigFeature_1.20.0.tgz

macOS Binary (arm64) sigFeature_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/sigFeature

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sigFeature

Bioc Package Browser https://code.bioconductor.org/browse/sigFeature/

Package Short Url https://bioconductor.org/packages/sigFeature/

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