seqTools

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see seqTools.

Analysis of nucleotide, sequence and quality content on fastq files

Bioconductor version: 3.18

Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Citation (from within R, enter citation("seqTools")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("seqTools")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqTools")

Introduction PDF R Script

seqTools_qual_report PDF R Script

Reference Manual PDF

NEWS Text

Version 1.36.0

In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)

License Artistic-2.0

Depends methods, utils, zlibbioc

Imports

System Requirements

URL

Suggests RUnit, BiocGenerics

Linking To zlibbioc

Enhances

Depends On Me

Imports Me qckitfastq

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package seqTools_1.36.0.tar.gz

Windows Binary seqTools_1.36.0.zip

macOS Binary (x86_64) seqTools_1.36.0.tgz

macOS Binary (arm64) seqTools_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/seqTools

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/seqTools

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