polyester

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see polyester.

Simulate RNA-seq reads

Bioconductor version: 3.18

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek

Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>

Citation (from within R, enter citation("polyester")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("polyester")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("polyester")

The Polyester package for simulating RNA-seq reads HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, Sequencing, Software

Version 1.38.0

In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)

License Artistic-2.0

Depends R (>= 3.0.0)

Imports Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc

System Requirements

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Suggests knitr, ballgown, markdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package polyester_1.38.0.tar.gz

Windows Binary polyester_1.38.0.zip

macOS Binary (x86_64) polyester_1.38.0.tgz

macOS Binary (arm64) polyester_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/polyester

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/polyester

Bioc Package Browser https://code.bioconductor.org/browse/polyester/

Package Short Url https://bioconductor.org/packages/polyester/

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