pepStat

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see pepStat.

Statistical analysis of peptide microarrays

Bioconductor version: 3.18

Statistical analysis of peptide microarrays

Author: Raphael Gottardo, Gregory C Imholte, Renan Sauteraud, Mike Jiang

Maintainer: Gregory C Imholte <gimholte at uw.edu>

Citation (from within R, enter citation("pepStat")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("pepStat")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pepStat")

Full peptide microarray analysis PDF R Script

Reference Manual PDF

Version 1.36.0

In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)

License Artistic-2.0

Depends R (>= 3.0.0), Biobase, IRanges

Imports limma, fields, GenomicRanges, ggplot2, plyr, tools, methods, data.table

System Requirements

Suggests pepDat, Pviz, knitr, shiny

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Follow Installation instructions to use this package in your R session.

Source Package pepStat_1.36.0.tar.gz

Windows Binary pepStat_1.36.0.zip

macOS Binary (x86_64) pepStat_1.36.0.tgz

macOS Binary (arm64) pepStat_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/pepStat

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pepStat

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