mBPCR

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see mBPCR.

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: 3.18

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Citation (from within R, enter citation("mBPCR")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("mBPCR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mBPCR")

mBPCR PDF R Script

Reference Manual PDF

Version 1.56.0

In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)

License GPL (>= 2)

Imports Biobase, graphics, methods, utils, grDevices

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Follow Installation instructions to use this package in your R session.

Source Package mBPCR_1.56.0.tar.gz

Windows Binary mBPCR_1.56.0.zip (64-bit only)

macOS Binary (x86_64) mBPCR_1.56.0.tgz

macOS Binary (arm64) mBPCR_1.56.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/mBPCR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mBPCR

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