ggsc

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see ggsc.

Visualizing Single Cell Data

Bioconductor version: 3.18

Useful functions to visualize single cell and spatial data. It supports both 'SingleCellExperiment' and 'Seurat' objects. It also supports visualizing the data using grammar of graphics implemented in 'ggplot2'.

Author: Guangchuang Yu [aut, cre, cph] , Shuangbin Xu [aut]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggsc")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ggsc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggsc")

Visualizing single cell data HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DimensionReduction, GeneExpression, SingleCell, Software, Spatial, Transcriptomics, Visualization

Version 1.0.2

In Bioconductor since BioC 3.18 (R-4.3) (0.5 years)

License Artistic-2.0

Depends

Imports Rcpp, RcppParallel, cli, dplyr, ggplot2, grDevices, grid, methods, rlang, scattermore, stats, Seurat, SingleCellExperiment, SummarizedExperiment, tidydr, tidyr, tibble, utils, yulab.utils

System Requirements

URL https://github.com/YuLab-SMU/ggsc

Bug Reports https://github.com/YuLab-SMU/ggsc/issues

Suggests aplot, BiocParallel, forcats, ggforce, ggnewscale, igraph, knitr, ks, Matrix, prettydoc, rmarkdown, scran, scater, scuttle, shadowtext, sf, SeuratObject, SpatialExperiment, STexampleData, testthat (>= 3.0.0)

Linking To Rcpp, RcppArmadillo, RcppParallel

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggsc_1.0.2.tar.gz

Windows Binary ggsc_1.0.2.zip

macOS Binary (x86_64) ggsc_1.0.2.tgz

macOS Binary (arm64) ggsc_1.0.2.tgz

Source Repository git clone https://git.bioconductor.org/packages/ggsc

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggsc

Bioc Package Browser https://code.bioconductor.org/browse/ggsc/

Package Short Url https://bioconductor.org/packages/ggsc/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.18 Source Archive