cqn

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see cqn.

Conditional quantile normalization

Bioconductor version: 3.18

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Author: Jean (Zhijin) Wu, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("cqn")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("cqn")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cqn")

CQN (Conditional Quantile Normalization) PDF R Script

Reference Manual PDF

NEWS Text

Version 1.48.0

In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)

License Artistic-2.0

Depends R (>= 2.10.0), mclust, nor1mix, stats, preprocessCore, splines, quantreg

Imports splines

System Requirements

URL

Suggests scales, edgeR

Linking To

Enhances

Depends On Me KnowSeq

Suggests Me extraChIPs

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package cqn_1.48.0.tar.gz

Windows Binary cqn_1.48.0.zip

macOS Binary (x86_64) cqn_1.48.0.tgz

macOS Binary (arm64) cqn_1.48.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/cqn

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cqn

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