brainflowprobes

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see brainflowprobes.

Plots and annotation for choosing BrainFlow target probe sequence

Bioconductor version: 3.18

Use these functions to characterize genomic regions for BrainFlow target probe design.

Author: Amanda Price [aut, cre] , Leonardo Collado-Torres [ctb]

Maintainer: Amanda Price <amanda.joy.price at gmail.com>

Citation (from within R, enter citation("brainflowprobes")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("brainflowprobes")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("brainflowprobes")

brainflowprobes users guide HTML R Script

Reference Manual PDF

NEWS Text

Version 1.16.0

In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)

License Artistic-2.0

Depends R (>= 3.6.0)

Imports Biostrings(>= 2.52.0), BSgenome.Hsapiens.UCSC.hg19(>= 1.4.0), bumphunter(>= 1.26.0), cowplot (>= 1.0.0), derfinder(>= 1.18.1), derfinderPlot(>= 1.18.1), GenomicRanges(>= 1.36.0), ggplot2 (>= 3.1.1), RColorBrewer (>= 1.1), utils, grDevices, GenomicState(>= 0.99.7)

System Requirements

Suggests BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 2.1.0), covr

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