biocGraph

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see biocGraph.

Graph examples and use cases in Bioinformatics

Bioconductor version: 3.18

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Citation (from within R, enter citation("biocGraph")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("biocGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocGraph")

Examples of plotting graphs Using Rgraphviz PDF R Script

HOWTO layout pathways PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, Software, Visualization

Version 1.64.0

In Bioconductor since BioC 2.1 (R-2.6) (16.5 years)

License Artistic-2.0

Depends Rgraphviz, graph

Imports Rgraphviz, geneplotter, graph, BiocGenerics, methods

System Requirements

URL

Suggests fibroEset, geneplotter, hgu95av2.db

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me EnrichmentBrowser

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocGraph_1.64.0.tar.gz

Windows Binary biocGraph_1.64.0.zip

macOS Binary (x86_64) biocGraph_1.64.0.tgz

macOS Binary (arm64) biocGraph_1.64.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/biocGraph

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biocGraph

Bioc Package Browser https://code.bioconductor.org/browse/biocGraph/

Package Short Url https://bioconductor.org/packages/biocGraph/

Package Downloads Report Download Stats