MobilityTransformR

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see MobilityTransformR.

Effective mobility scale transformation of CE-MS(/MS) data

DOI: 10.18129/B9.bioc.MobilityTransformR

Bioconductor version: 3.18

MobilityTransformR collects a tool set for effective mobility scale transformation of CE-MS/MS data in order to increase reproducibility. It provides functionality to determine the migration times from mobility markers that have been added to the analysis and performs the transformation based on these markers. MobilityTransformR supports the conversion of numeric vectors, Spectra-objects, and MSnOnDiskExp.

Author: Liesa Salzer [cre, aut]

Maintainer: Liesa Salzer <liesa.salzer at helmholtz-muenchen.de>

Citation (from within R, enter citation("MobilityTransformR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MobilityTransformR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MobilityTransformR")

Description and usage of MobilityTransformR HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, MassSpectrometry, Metabolomics, Preprocessing, Proteomics, Software

Version 1.6.0

In Bioconductor since BioC 3.15 (R-4.2) (2 years)

License Artistic-2.0

Depends MSnbase, R (>= 4.2)

Imports xcms, MetaboCoreUtils, Spectra

System Requirements

URL https://github.com/LiesaSalzer/MobilityTransformR

Bug Reports https://github.com/LiesaSalzer/MobilityTransformR/issues

Suggests testthat, msdata(>= 0.35.3), knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MobilityTransformR_1.6.0.tar.gz

Windows Binary MobilityTransformR_1.6.0.zip

macOS Binary (x86_64) MobilityTransformR_1.6.0.tgz

macOS Binary (arm64) MobilityTransformR_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MobilityTransformR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MobilityTransformR

Bioc Package Browser https://code.bioconductor.org/browse/MobilityTransformR/

Package Short Url https://bioconductor.org/packages/MobilityTransformR/

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