ArrayExpress

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: 3.18

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan

Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

ArrayExpress: Import and convert ArrayExpress data sets into R object PDF R Script

Reference Manual PDF

NEWS Text

Version 1.62.0

In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)

License Artistic-2.0

Depends R (>= 2.9.0), Biobase(>= 2.4.0)

Imports oligo, limma, httr, utils, jsonlite, rlang, tools, methods

System Requirements

URL

Suggests affy

Linking To

Enhances

Imports Me

Suggests Me Hiiragi2013

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Windows Binary ArrayExpress_1.62.0.zip

macOS Binary (x86_64) ArrayExpress_1.62.0.tgz

macOS Binary (arm64) ArrayExpress_1.62.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ArrayExpress

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ArrayExpress

Package Downloads Report Download Stats