HumanAffyData

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see HumanAffyData.

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Bioconductor version: 3.17

Re-analysis of human gene expression data generated on the Affymetrix HG_U133PlusV2 (EH176) and Affymetrix HG_U133A (EH177) platforms. The original data were normalized using robust multiarray averaging (RMA) to obtain an integrated gene expression atlas across diverse biological sample types and conditions. The entire compendia comprisee 9395 arrays for EH176 and 5372 arrays for EH177.

Author: Brad Nelms

Maintainer: Brad Nelms <bnelms.research at gmail.com>

Citation (from within R, enter citation("HumanAffyData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("HumanAffyData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HumanAffyData")

Intro to the HumanAffyData package PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ArrayExpress, ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData

Version 1.26.0

License Artistic-2.0

Depends ExperimentHub, Biobase, R (>= 3.3)

Imports

System Requirements

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Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HumanAffyData_1.26.0.tar.gz

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macOS Binary (x86_64)

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Source Repository git clone https://git.bioconductor.org/packages/HumanAffyData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HumanAffyData

Package Short Url https://bioconductor.org/packages/HumanAffyData/

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