HarmonizedTCGAData

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see HarmonizedTCGAData.

Processed Harmonized TCGA Data of Five Selected Cancer Types

DOI: 10.18129/B9.bioc.HarmonizedTCGAData

Bioconductor version: 3.17

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Author: Tianle Ma

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("HarmonizedTCGAData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("HarmonizedTCGAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmonizedTCGAData")

Patient Affinity Matrices Derived from Harmonized TCGA Dataset HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CancerData, ExperimentData, ReproducibleResearch

Version 1.22.0

License GPL-3

Depends R (>= 3.4.0)

Imports ExperimentHub

System Requirements

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Suggests AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HarmonizedTCGAData_1.22.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/HarmonizedTCGAData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HarmonizedTCGAData

Package Short Url https://bioconductor.org/packages/HarmonizedTCGAData/

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