rpx

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see rpx.

R Interface to the ProteomeXchange Repository

Bioconductor version: 3.17

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rpx")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("rpx")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rpx")

An R interface to the ProteomeXchange repository HTML R Script

Reference Manual PDF

NEWS Text

Version 2.8.0

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License GPL-2

Depends R (>= 3.5.0), methods

Imports BiocFileCache, jsonlite, xml2, RCurl, curl, utils

System Requirements

Suggests Biostrings, BiocStyle, testthat, knitr, tibble, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Links To Me

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Follow Installation instructions to use this package in your R session.

Source Package rpx_2.8.0.tar.gz

Windows Binary rpx_2.8.0.zip

macOS Binary (x86_64) rpx_2.8.0.tgz

macOS Binary (arm64) rpx_2.8.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/rpx

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rpx

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Old Source Packages for BioC 3.17 Source Archive