iCOBRA

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: 3.17

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("iCOBRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCOBRA")

iCOBRA User Guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Software, Visualization

Version 1.28.1

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License GPL (>=2)

Depends R (>= 4.0)

Imports shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, markdown, utils

System Requirements

URL https://github.com/csoneson/iCOBRA

Bug Reports https://github.com/csoneson/iCOBRA/issues

Suggests knitr, rmarkdown, testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me muscat, SummarizedBenchmark

Links To Me

Build Report Build Report