heatmaps

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see heatmaps.

Flexible Heatmaps for Functional Genomics and Sequence Features

Bioconductor version: 3.17

This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.

Author: Malcolm Perry <mgperry32 at gmail.com>

Maintainer: Malcolm Perry <mgperry32 at gmail.com>

Citation (from within R, enter citation("heatmaps")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("heatmaps")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("heatmaps")

Vignette Title HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FunctionalGenomics, SequenceMatching, Software, Visualization

Version 1.24.0

In Bioconductor since BioC 3.5 (R-3.4) (7 years)

License Artistic-2.0

Depends R (>= 3.5.0)

Imports methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb

System Requirements

URL

Suggests BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat

Linking To

Enhances

Depends On Me

Imports Me seqArchRplus

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package heatmaps_1.24.0.tar.gz

Windows Binary heatmaps_1.24.0.zip (64-bit only)

macOS Binary (x86_64) heatmaps_1.24.0.tgz

macOS Binary (arm64) heatmaps_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/heatmaps

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/heatmaps

Bioc Package Browser https://code.bioconductor.org/browse/heatmaps/

Package Short Url https://bioconductor.org/packages/heatmaps/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.17 Source Archive