biodbNcbi

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see biodbNcbi.

biodbNcbi, a library for connecting to NCBI Databases.

Bioconductor version: 3.17

The biodbNcbi library provides access to the NCBI databases CCDS, Gene, Pubchem Comp and Pubchem Subst, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name or mass.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbNcbi")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("biodbNcbi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbNcbi")

Introduction to the biodbNcbi package. HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Infrastructure, Software

Version 1.4.0

In Bioconductor since BioC 3.15 (R-4.2) (2 years)

License AGPL-3

Depends R (>= 4.1)

Imports biodb(>= 1.3.2), R6, XML, chk

System Requirements

URL https://github.com/pkrog/biodbNcbi

Bug Reports https://github.com/pkrog/biodbNCbi/issues

Suggests roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbNcbi_1.4.0.tar.gz

Windows Binary biodbNcbi_1.4.0.zip

macOS Binary (x86_64) biodbNcbi_1.4.0.tgz

macOS Binary (arm64) biodbNcbi_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/biodbNcbi

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbNcbi

Bioc Package Browser https://code.bioconductor.org/browse/biodbNcbi/

Package Short Url https://bioconductor.org/packages/biodbNcbi/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.17 Source Archive