affycomp

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see affycomp.

Graphics Toolbox for Assessment of Affymetrix Expression Measures

Bioconductor version: 3.17

The package contains functions that can be used to compare expression measures for Affymetrix Oligonucleotide Arrays.

Author: Rafael A. Irizarry <rafa at jhu.edu> and Zhijin Wu <zwu at stat.brown.edu> with contributions from Simon Cawley <simon_cawley at affymetrix.com>

Maintainer: Robert D. Shear <rshear at ds.dfci.harvard.edu>

Citation (from within R, enter citation("affycomp")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("affycomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affycomp")

affycomp primer PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, OneChannel, Preprocessing, Software

Version 1.76.1

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)

License GPL (>= 2)

Depends R (>= 2.13.0), methods, Biobase(>= 2.3.3)

Imports

System Requirements

URL https://bioconductor.org/packages/affycomp

Bug Reports https://github.com/rafalab/affycomp/issues

Suggests splines, affycompData

Linking To

Enhances

Depends On Me affycompData

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affycomp_1.76.1.tar.gz

Windows Binary affycomp_1.76.1.zip

macOS Binary (x86_64) affycomp_1.76.1.tgz

macOS Binary (arm64) affycomp_1.76.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/affycomp

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affycomp

Bioc Package Browser https://code.bioconductor.org/browse/affycomp/

Package Short Url https://bioconductor.org/packages/affycomp/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.17 Source Archive