RandomWalkRestartMH

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see RandomWalkRestartMH.

Random walk with restart on multiplex and heterogeneous Networks

DOI: 10.18129/B9.bioc.RandomWalkRestartMH

Bioconductor version: 3.17

This package performs Random Walk with Restart on multiplex and heterogeneous networks. It is described in the following article: "Random Walk With Restart On Multiplex And Heterogeneous Biological Networks" .

Author: Alberto Valdeolivas [cre, aut, ctb]

Maintainer: Alberto Valdeolivas <alvaldeolivas at gmail.com>

Citation (from within R, enter citation("RandomWalkRestartMH")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RandomWalkRestartMH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RandomWalkRestartMH")

Random Walk with Restart on Multiplex and Heterogeneous Network HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BioCarta, BiomedicalInformatics, GenePrediction, GraphAndNetwork, KEGG, MathematicalBiology, Network, NetworkInference, Pathways, Reactome, Software, SomaticMutation, SystemsBiology

Version 1.20.0

In Bioconductor since BioC 3.7 (R-3.5) (6 years)

License GPL (>= 2)

Depends R (>= 3.5.0)

Imports igraph, Matrix, dnet, methods

System Requirements

URL https://github.com/alberto-valdeolivas/RandomWalkRestartMH

Bug Reports https://github.com/alberto-valdeolivas/RandomWalkRestartMH/issues

Suggests BiocStyle, knitr, rmarkdown, testthat

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RandomWalkRestartMH_1.20.0.tar.gz

Windows Binary RandomWalkRestartMH_1.20.0.zip

macOS Binary (x86_64) RandomWalkRestartMH_1.20.0.tgz

macOS Binary (arm64) RandomWalkRestartMH_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RandomWalkRestartMH

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RandomWalkRestartMH

Bioc Package Browser https://code.bioconductor.org/browse/RandomWalkRestartMH/

Package Short Url https://bioconductor.org/packages/RandomWalkRestartMH/

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Old Source Packages for BioC 3.17 Source Archive