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HPAStainR
This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see HPAStainR.
Queries the Human Protein Atlas Staining Data for Multiple Proteins and Genes
Bioconductor version: 3.17
This package is built around the HPAStainR function. The purpose of the HPAStainR function is to query the visual staining data in the Human Protein Atlas to return a table of staining ranked cell types. The function also has multiple arguments to personalize to output as well to include cancer data, csv readable names, modify the confidence levels of the results and more. The other functions exist exclusively to easily acquire the data required to run HPAStainR.
Author: Tim O. Nieuwenhuis [aut, cre]
Maintainer: Tim O. Nieuwenhuis <tnieuwe1 at jhmi.edu>
citation("HPAStainR")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HPAStainR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HPAStainR")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.