AllelicImbalance

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see AllelicImbalance.

Investigates Allele Specific Expression

Bioconductor version: 3.17

Provides a framework for allelic specific expression investigation using RNA-seq data.

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Citation (from within R, enter citation("AllelicImbalance")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("AllelicImbalance")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AllelicImbalance")

AllelicImbalance Vignette PDF R Script

Reference Manual PDF

NEWS Text

Version 1.38.0

In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)

License GPL-3

Depends R (>= 4.0.0), grid, GenomicRanges(>= 1.31.8), SummarizedExperiment(>= 0.2.0), GenomicAlignments(>= 1.15.6)

Imports methods, BiocGenerics, AnnotationDbi, BSgenome(>= 1.47.3), VariantAnnotation(>= 1.25.11), Biostrings(>= 2.47.6), S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), Rsamtools(>= 1.99.3), GenomicFeatures(>= 1.31.3), Gviz, lattice, latticeExtra, gridExtra, seqinr, GenomeInfoDb, nlme

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Follow Installation instructions to use this package in your R session.

macOS Binary (x86_64) AllelicImbalance_1.38.0.tgz

macOS Binary (arm64) AllelicImbalance_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/AllelicImbalance

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AllelicImbalance

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Old Source Packages for BioC 3.17 Source Archive