AHMassBank

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see AHMassBank.

MassBank Annotation Resources for AnnotationHub

Bioconductor version: 3.17

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Author: Johannes Rainer [cre]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("AHMassBank")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("AHMassBank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHMassBank")

Provide EnsDb databases for AnnotationHub HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationHubSoftware, MassSpectrometry, Software

Version 1.0.0

In Bioconductor since BioC 3.17 (R-4.3) (1 year)

License Artistic-2.0

Depends R (>= 4.2)

Imports AnnotationHubData(>= 1.5.24)

System Requirements

URL https://github.com/jorainer/AHMassBank

Bug Reports https://github.com/jorainer/AHMassBank/issues

Suggests BiocStyle, knitr, AnnotationHub(>= 2.7.13), rmarkdown, methods, CompoundDb(>= 1.1.4)

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AHMassBank_1.0.0.tar.gz

Windows Binary AHMassBank_1.0.0.zip

macOS Binary (x86_64) AHMassBank_1.0.0.tgz

macOS Binary (arm64) AHMassBank_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/AHMassBank

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AHMassBank

Bioc Package Browser https://code.bioconductor.org/browse/AHMassBank/

Package Short Url https://bioconductor.org/packages/AHMassBank/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.17 Source Archive