mcsurvdata

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see mcsurvdata.

Meta cohort survival data

Bioconductor version: 3.16

This package stores two merged expressionSet objects that contain the gene expression profile and clinical information of -a- six breast cancer cohorts and -b- four colorectal cancer cohorts. Breast cancer data are employed in the vignette of the hrunbiased package for survival analysis of gene signatures.

Author: Adria Caballe Mestres [aut, cre], Antoni Berenguer Llergo [aut], Camille Stephan-Otto Attolini [aut]

Maintainer: Adria Caballe Mestres <adria.caballe at irbbarcelona.org>

Citation (from within R, enter citation("mcsurvdata")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("mcsurvdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mcsurvdata")

analysis vignette HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, GEO, Homo_sapiens_Data, MicroarrayData

Version 1.16.0

License GPL (>=2)

Depends R (>= 3.5), ExperimentHub

Imports AnnotationHub, Biobase

System Requirements

URL https://github.com/adricaba/mcsurvdata

Suggests knitr

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mcsurvdata_1.16.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/mcsurvdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mcsurvdata

Package Short Url https://bioconductor.org/packages/mcsurvdata/

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