curatedTBData

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see curatedTBData.

Curation of existing 49 tuberculosis transcriptomic studies

Bioconductor version: 3.16

The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

Author: Xutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]

Maintainer: Xutao Wang <xutaow at bu.edu>

Citation (from within R, enter citation("curatedTBData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("curatedTBData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedTBData")

curatedTBData HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data

Version 1.4.0

License MIT + file LICENSE

Depends R (>= 4.1.0)

Imports AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats

System Requirements

URL https://github.com/compbiomed/curatedTBData

Bug Reports https://github.com/compbiomed/curatedTBData/issues

Suggests BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedTBData_1.4.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/curatedTBData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedTBData

Package Short Url https://bioconductor.org/packages/curatedTBData/

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