VectraPolarisData

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see VectraPolarisData.

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Bioconductor version: 3.16

Provides two multiplex imaging datasets collected on Vectra instruments at the University of Colorado Anschutz Medical Campus. Data are provided as a Spatial Experiment objects. Data is provided in tabular form and has been segmented and phenotyped using Inform software. Raw .tiff files are not included.

Author: Wrobel Julia [aut, cre] , Tusharkanti Ghosh [aut]

Maintainer: Wrobel Julia <julia.wrobel at cuanschutz.edu>

Citation (from within R, enter citation("VectraPolarisData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("VectraPolarisData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VectraPolarisData")

VectraPolarisData HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, ReproducibleResearch, SingleCellData, SpatialData

Version 1.2.0

License Artistic-2.0

Depends ExperimentHub, SpatialExperiment, utils

Imports

System Requirements

URL https://github.com/julia-wrobel/VectraPolarisData

Bug Reports https://support.bioconductor.org/t/VectraPolarisData

Suggests BiocStyle, knitr, rmarkdown, dplyr

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package VectraPolarisData_1.2.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/VectraPolarisData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/VectraPolarisData

Package Short Url https://bioconductor.org/packages/VectraPolarisData/

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