TCGAWorkflowData

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TCGAWorkflowData.

Data for TCGA Workflow

Bioconductor version: 3.16

This experimental data package contains 11 data sets necessary to follow the "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages".

Author: Tiago Chedraoui Silva <tiagochst at usp.br>

Maintainer: Tiago Chedraoui Silva <tiagochst at usp.br>

Citation (from within R, enter citation("TCGAWorkflowData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TCGAWorkflowData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCGAWorkflowData")

'Example data for TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages' HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CancerData, ExperimentData, Homo_sapiens_Data, MicroarrayData

Version 1.22.0

License GPL-3

Depends R (>= 3.5.0)

Imports SummarizedExperiment

System Requirements

URL https://f1000research.com/articles/5-1542/v2

Bug Reports https://github.com/BioinformaticsFMRP/TCGAWorkflow/issues

Suggests knitr, rmarkdown, pander, testthat

Linking To

Enhances

Depends On Me

Imports Me TCGAWorkflow

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TCGAWorkflowData_1.22.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/TCGAWorkflowData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TCGAWorkflowData

Package Short Url https://bioconductor.org/packages/TCGAWorkflowData/

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