PasillaTranscriptExpr

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see PasillaTranscriptExpr.

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Bioconductor version: 3.16

Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("PasillaTranscriptExpr")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PasillaTranscriptExpr")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PasillaTranscriptExpr")

Generation of transcript counts from pasilla dataset with kallisto PDF R Script

Reference Manual PDF

NEWS Text

Version 1.26.0

License GPL (>= 3)

Depends R (>= 3.3.0)

Imports

System Requirements

URL

Suggests rtracklayer, BiocStyle, knitr, testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me DRIMSeq

Links To Me

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Follow Installation instructions to use this package in your R session.

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Source Repository git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PasillaTranscriptExpr

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