MMAPPR2data

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MMAPPR2data.

Sample Data for MMAPPR2

Bioconductor version: 3.16

Contains data for illustration purposes in the MMAPPR2 package, namely simulated BAM files containing RNA-Seq data for a mutation in the slc24a5 gene, taken from the GRCz11 genome. Also contains reference sequence and annotation files for the region.

Author: Kyle Johnsen [aut], Jonathon Hill [cre]

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("MMAPPR2data")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MMAPPR2data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MMAPPR2data")

Using MMAPPR2data Resources HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Danio_rerio_Data, ExperimentData, Genome, RNASeqData, SequencingData

Version 1.12.0

License GPL-3

Depends R (>= 3.6.0)

Imports Rsamtools

System Requirements

URL https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613585/ https://github.com/kjohnsen/MMAPPR2

Suggests knitr, rmarkdown, BiocStyle, roxygen2, seqinr, readr

Linking To

Enhances MMAPPR2

Depends On Me

Imports Me

Suggests Me MMAPPR2

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MMAPPR2data_1.12.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/MMAPPR2data

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MMAPPR2data

Package Short Url https://bioconductor.org/packages/MMAPPR2data/

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