KEGGdzPathwaysGEO

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see KEGGdzPathwaysGEO.

KEGG Disease Datasets from GEO

Bioconductor version: 3.16

This is a collection of 24 data sets for which the phenotype is a disease with a corresponding pathway in the KEGG database.This collection of datasets were used as gold standard in comparing gene set analysis methods by the PADOG package.

Author: Gaurav Bhatti, Adi L. Tarca

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Citation (from within R, enter citation("KEGGdzPathwaysGEO")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("KEGGdzPathwaysGEO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, GEO, MicroarrayData

Version 1.36.0

License GPL-2

Depends R (>= 2.13.0)

Imports Biobase, BiocGenerics

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me PADOG

Imports Me GSEABenchmarkeR

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGdzPathwaysGEO_1.36.0.tar.gz

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Source Repository git clone https://git.bioconductor.org/packages/KEGGdzPathwaysGEO

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGdzPathwaysGEO

Package Short Url https://bioconductor.org/packages/KEGGdzPathwaysGEO/

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