CopyhelpeR

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see CopyhelpeR.

Helper files for CopywriteR

Bioconductor version: 3.16

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Oscar Krijgsman <o.krijgsman at nki.nl>

Citation (from within R, enter citation("CopyhelpeR")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CopyhelpeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyhelpeR")

CopyhelpeR PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, GenomicSequence, Homo_sapiens

Version 1.30.0

License GPL-2

Depends R (>= 3.5.0)

Imports

System Requirements

URL

Suggests BiocStyle

Linking To

Enhances

Depends On Me

Imports Me CopywriteR

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CopyhelpeR_1.30.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/CopyhelpeR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CopyhelpeR

Package Short Url https://bioconductor.org/packages/CopyhelpeR/

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